Microbial and Biochemical Technology Lab @ UPRM

As part of the Bio-MINDS Program

So far… September 26, 2008

Filed under: Uncategorized — Javier @ 2:56 am

A technique tha will be used in my project is the Sodium Dodecyl Sulfate- Poly-Acrilamide Gel Electrophoresis (SDS-PAGE).  This technique consists in the separation of a protein sample that migrates through a porous matrix that controls the migration of its components according to their sizes when exposed through an electric field.  The protein sample is treated previously with SDS that unfolds proteins by hrydrophobic interactions and gives them a net negative charge proportional to its size.  This allows the multiple components of a protein extract to migrate at different rates according to their sizes that may be visualized by Coomasie Blue staining.  This technique will help us to identify differential expression on two samples treated at different conditions.

As of today, my project has being in the process of design, preparation of lab equipment, ordering, and the wait for the materials neccesary for the experiment.  In a scale of 1 through 5 the progress would be at 2. Since I’m part of a young microbiology Lab in a chemical engineering department, to have the neccesary materials and equipment to perform biological samples has been an arduos process.  However, this has provided ample time for establishing a method based on published literature in order to reach our project goals.

 

Phanerochaete chrysosporium… September 16, 2008

Filed under: Uncategorized — Javier @ 6:32 pm

     In the Microbial and Biochemical Technology Lab in the Chemical Engineering Department at the University of Puerto Rico at Mayaguez we are interested in finding organisms capable of degrading plant biomass from lignocellulosic plants in order to produce useful compounds like ethanol or lignin-derived products.  My project consists on protein characterization of media that reduces pelletization of the fungi Phanerochaete chrysosporium.  We are interested in finding some target proteins that are resposible for this globulization for later characterization of their enzyme kinetics.  This may be useful for future industrial applications, development of new energy sources, waste treatment, and other applications.

 

In NYC… September 16, 2008

Filed under: Uncategorized — Javier @ 5:38 pm

     This summer I had the opportunity to perform research at Columbia University in New York City as part of the Graduate School of Arts and Sciences – Leadership Alliance Summer Research Program.  I was a member of Dr. Brent R. Stockwell’s Lab that searches for novel cell death pathways.  My work involved the characterization of protein expression patterns from cells that were treated with small compounds identified through high throughput screens for the induction of new cell death pathways distinct from apoptosis, necrosis, and autophagy.  A difference in expression was observed for proteins involved in apoptosis like Bid and Caspase-3 among other proteins.  Protein expression patterns differed from those of cells treated with necrosis and autophagy inducing drugs and markers.

     Being in New York City allowed me to enjoy many new experiences aside from bench work.  We were able to attend to different activities like Shakespeare in the Park, The New York Phillarmonic at Central Park, the Museum of Modern Art, Governor’s Island, Broadway shows, and many more…